Andreas Markmann

Theoretical Chemistry
Chemistry Department
Yale University
P.O. Box 208107
New Haven, CT 06520-8107
+1 (203) 432-5911


Contents

Work Experience
Education
Graduate Course "Conical Intersections"
Direct links to some pages of special interest on this site
PhD Thesis
Reprints
Preprints


Work Experience

Postdoc

3/2010-:
Yale University Chemistry Department Theoretical Chemistry
11/2008-2/2010: Technische Universität München Department Chemie Theoretical Chemistry
3/2007-10/2008: Lynen Scholarship at Princeton University Department of Chemistry Theoretical Chemistry
4/2006-2/2007: Technische Universität München Department Chemie Theoretical Chemistry
1/2006-3/2006: Tohoku University, Sendai, Japan Graduate School of Science and Faculty of Science Laboratory of Theoretical Chemistry
3/2005-12/2005: Technische Universität München Department Chemie Theoretical Chemistry
3/2002-2/2005: Universität Heidelberg Physikalisch-Chemisches Institut Theoretical Chemistry
I am using the Heidelberg MCTDH package in my research.

Education

PhD

10/1998-2/2002: University College London Department of Physics and Astronomy Condensed Matter and Materials Physics
You can download my PhD thesis (10.5 MB, two A5 pages on each landscape page).
Joint winner of Carey-Foster Prize for Postgraduate Research in 2005 for thesis.

M.Sc.

10/1997-9/1998: Erasmus at Imperial College London Department of Mathematics,
Thesis written at Queen Mary & Westfield College London School of Mathematical Sciences.

Vordiplom

10/1994-9/1997: Humboldt-Universität Berlin Institut für Physik
Humboldt-Universität Berlin Institut für Mathematik

Abitur

9/1989-7/1994: Gymnasium with Mathematical and Scientific Profile "Heinrich Hertz" in Berlin

Graduate Course "Conical Intersections"

9th Nov 2005: "Adiabatic and Diabatic Representations" by Andreas Markmann. Download notes / talk.
21st Nov 2005: "The multi-mode vibronic-coupling approach" by Sabyashachi Mishra. Download talk.

Direct links to some pages of special interest on this site

Academic

Allene and Pentatetraene Cations: Poster at Faraday Discussion 127 and the
6th International Symposium of the Volkswagen-Stiftung on Intra- and Intermolecular Electron Transfer
DFT of HCl On MgO: Poster used at DFT 2001 conference at the Royal Institution of Great Britain
Visualisation of a phonon mode which is localised at a step

Programming

Molecule viewer

Publications

PhD Thesis

Theoretical Study of Photoinduced Reactions in Ionic Crystals; Mechanisms, Energy Dissipation and Coherence Effects
1. Introduction, 2. Methods of Classical Dynamics and Data Analysis, 3. Localisation of Vibrational Modes at Ionic Crystal Surfaces, 4. DFT Calculations of HCl Adsorbed on the MgO(001) Surface, 5. Shell Model Dynamics of HCl on the MgO(001) Surface Terrace, 6. Quantum Control of HCl on MgO(001), 7. Quantum Control of the STE Separation in Alkali Halides

Download: 02-AMarkmann2004-PhD.pdf

Reprints

Allene and pentatetraene cations as models for intramolecular charge transfer: Vibronic coupling Hamiltonian and conical intersections
Vibronic coupling effects involving cationic charge localized states. Parameters for a five-state, all-mode diabatic vibronic coupling model Hamiltonian were least-square fitted to ab initio potentials.
Download: 03-AMarkmann2005-1.pdf
Simulation of a complex spectrum: Interplay of five electronic states and 21 vibrational degrees of freedom in C5H4+
Photoelectron spectrum of the pentatetraene cation in the neighborhood of the state with charge-localized components. Quantum nuclear dynamics calculations using the multiconfiguration time-dependent Hartree method, taking all 21 vibrational normal modes into account. Compared to experiment, the main features are reproduced.
Download: 04-AMarkmann2005-2.pdf
Simulation of coherent control of hydroxyl formed due to HCl adsorption on MgO(001)
The optimal control technique is used to design laser fields that maximise the yield of hydroxyl molecules at the MgO(001) surface in a vibrationally highly excited state. The main frequencies and chirp parameters of the predicted fields are extracted. Predicted pulses involve considerable contributions from double excitations. Taking dissipation into account, a lowering of the excitation yield is predicted but only by 50%, so that the proposed process remains effective. A radiative mechanism is proposed to desorb hydrogen from the vibrationally excited state of OH-.
Download: 05-AMarkmann2006-1.pdf
Chemisorption of HCl to the MgO(001) surface: A DFT study
We find dissociative chemisorption at a coverage smaller than 0.5 monolayer with a Cl- ion electrostatically coupled to the OH- ion at the surface oxygen site. At rising coverage, an increase in dipole-dipole repulsion between HCl molecules leads to a lowering of the adsorption energy per HCl and a change of binding towards hydrogen-bridge type as well as a lowering of the activation energy for Cl- diffusion.
Download: 06-AMarkmann2006-2.pdf
Photoinduced Electron and Proton Transfer in the Hydrogen-Bonded Pyridine-Pyrrole System
We present a detailed analysis of the mechanism of photoinduced electron and proton transfer in the planar pyrrole-pyridine hydrogen-bonded system, a model for the photochemistry of hydrogen bonds in DNA base pairs. Two different crossings, an avoided crossing and a conical intersection, are the key steps for forward and backward electron and proton transfer providing to the system photostability against UV radiation by restoring the system in its initial electronic and geometric structure.
Download: 07-AMarkmann2007-1.pdf
Adaptive Control of Coherent Electron Transport in Semiconductors
The feasibility of using shaped electrostatic potentials is explored for achieving specified final scattering distributions of an electron wave packet in two dimensional GaAs/AlGaAs heterostructures. Simulations suggest that highly complex target scattering objectives may be achieved by employing adaptive closed loop optimal control to determine the voltages of multi-pixel surface gates. A proposed experimental design is described for testing the Adaptive Control of Coherent ElectroN Transport in Semiconductors (ACCENTS).
Download: 16-AMarkmannPre-6.pdf

Preprints

Theoretical Study of Intramolecular Charge Transfer in the Allene and Pentatetraene Cations
We have simulated charge transfer processes in the allene and pentatetraene cations using quantum nuclear dynamics calculations, taking five electronic states and vibrational normal modes into account (15 and 21, respectively). These ultrafast processes depend crucially on the vibronic interaction between the electronic states of interest through a conical intersection. The transition rate can be influenced by displacing the initial wave packet along vibrational modes with non-negligible Poisson parameters, corresponding to non-Condon ionisation.
Download: 15-AMarkmannPre-5.pdf
Simulation of Coherent Dissociation of the Self-Trapped Exciton in Alkali Halides
We have used existing theoretical and experimental results to parameterise a generic model potential for the self-trapped exciton in alkali halides and performed nuclear quantum dynamics simulations using grid-based wave function propagation techniques. A photoinduced reaction is proposed that separates the self-trapped exciton into a pair of point defects via an electronic excitation. A double-pump, double-dump pulse scheme is proposed to attain a satisfactory yield of separated defect pairs.
Download: 14-AMarkmannPre-4.pdf<
Shell Model Dynamics of HCl on the MgO(001) Surface Terrace
HCl adsorbed on the MgO(001) surface is studied with shell model lattice dynamics and molecular dynamics. The stretch mode frequency of the OH- molecule formed due to HCl adsorption is well separated from the MgO slab spectrum while its rotational and librational modes are closer but still separated. No internal HCl modes exist, confirming the notion of dissociated adsorption of HCl. After equilibrium molecular dynamics (MD), a sudden excitation of the OH- stretch mode is applied to a snapshot of the equilibrium dynamics. In the ensuing MD, energy exchange between the OH- stretch mode and the surface proceeds exclusively via the OH- rotational and librational modes, whose orientations at each time step are readily derived from symmetry considerations. A model is extracted for the dissipation of the OH- stretch energy.
Download: 13-AMarkmannPre-3.pdf
Lattice Dynamics Simulation of Ionic Crystal Surfaces: II. Vibrational Modes Localised at Surface Steps and Corners
Attenuation parameter functions are used to quantify the degree of localisation of normal modes at steps in the KBr(001), MgO(001) and CaF2(111) surfaces and at corners in a finite cube of MgO as examples for one- and zero-dimensional defects in a surface. By the frequencies of the localised modes thus obtained it can then be decided whether an adsorbed molecule is likely to couple to the surface. Out of the materials studied, step-localised modes are predicted only in MgO and KBr. The maximum degree of localisation is weaker in MgO, as it has no pronounced phonon band gap. Step modes with motion along and around the step are predicted. Based on these findings, mechanisms for vibrational energy transport along step funnelled by step localised modes are proposed. Normal modes localised at the corners of an MgO cube are identified with an analogous criterion. They correspond to similar vibrational modes at kinks in surface steps, whose properties are extrapolated.
Download: 12-AMarkmannPre-2.pdf
Lattice Dynamics Simulation of Ionic Crystal Surfaces: I. Criteria for Vibrational Mode Localisation and Surface Modes
A simple function, called attenuation parameter, is presented that can be used to extract quantitative information on the degree of localisation of normal modes at locations of arbitrary dimensionality from eigenvector components calculated in lattice dynamics simulations. As examples for localisation at two-dimensional locations, modes localised at the KBr(001), MgO(001) and CaF2(111) surfaces modelled by periodic shell model slabs are determined using the attenuation parameter for surface localisation. This allows to gain an overview of the frequencies of the crystalline vibrations localised at the surface which is important for the vibrational interaction with adsorbed molecules.
Download: 11-AMarkmannPre-1.pdf

















Sep 1989-Jul 1994 Heinrich Hertz Oberschule Berlin
High school with mathematical and scientific profile (entry examinations).
Majored in mathematics + physics. First prize in Berlin & national recognition 1989,
top score in Berlin 1990 Mathematics Olympiad.
Sep 1994-Jul 1997 Humboldt Universität Berlin
Vordiploms (BSc) in mathematics and physics + additional classes.
Oct 1997-Jul 1998 Imperial College London
MSc. Mathematics with classes in physics.
Oct 1998-Feb 2002 University College London
PhD. Condensed Matter and Materials Physics.
Photoinduced Reactions on Surfaces & in Condensed Matter.
Joint winner Carey-Foster prize for best thesis in physics.
Mar 2002-Feb 2005 Universität Heidelberg
Research Fellow. charge transfer dynamics in carbon chain molecules.
Taught problem classes in quantum mechanics.
Mar 2005-Feb 2007, Nov 2008-Feb 2010 Technische Universität München
Research Fellow. proton dynamics in biologically relevant molecules.
Head of problem classes in mathematics, quantum mechanics problem classes.
Co-advised postdocs working on dye on surface and proton dynamics.
Jan 2006-Mar 2006 Tohoku University Sendai, Japan
Research Fellow. control of molecular rotors.
Co-advised PhD student on proton dynamics.
Mar 2007-Oct 2008 Princeton University
Research Fellow. cyclic ozone on surface, properties and desorption.
Taught in CH509: Quantum Control, co-advised PhD student on electron dynamics.
Mar 2010- Yale University
Associate Research Scientist. Quantum dynamics of electrons in
high energy density plasma, isomerization dynamics in rhodopsin etc.
Supervising undergrad project.
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